| linkage group 3 | |||||
|---|---|---|---|---|---|
| Marker | Scaffold Number in Fugu ver5 | Map position (cM) | Primer sequences | ||
| Male Map | Female Map | Forward (5'-3') | Reverse (5'-3') | ||
| f45 | 398 | 0.0 | 0.0 | cgaagcttcccggtagagtc | tgggaagaagggagcagaat |
| f18 | 398 | 0.0 | 0.0 | acggtcgtgtccactttatctcca | gcagtcagcagcaaattcaacaac |
| f664 | 220 | 0.0 | - | ggtggcagtctgaaaatggt | gatcccccattttctctggt |
| f660 | 215 | 0.0 | 0.0 | cgaacctgtgcacactgaag | tctgggctaccagcacgtat |
| f1398 | 570 | 0.0 | 0.0 | gcttttgctcctctgagctg | aaaactgggaagcagacgtg |
| f1632 | 897 | 0.0 | 0.0 | aaggcactagggagtgtgct | gagtgtttccccacaacacc |
| f846 | 457 | 0.0 | 1.6 | gagatggcagcctggtaaag | tgggatgcctaaaacgattc |
| f1045 | 311 | 0.0 | 3.2 | tctcacttttccccatcagc | cacagtcacccctcacacac |
| f896 | 278 | 0.0 | 4.8 | agtggagggatgatggacag | aaacgtgggacatcatcaca |
| f745 | 343 | 0.0 | 6.4 | gtaggcagccagagcttcag | tgcctcaacaagtccaatgt |
| f924 | 365 | - | 14.5 | gctgaaccagggtgttcatt | ctgtgggtcccagatcaaat |
| f930 | 387 | 0.0 | 14.5 | agcggtgtccttatctggtg | aggcggtcctctccatatct |
| f164 | 147 | 0.0 | 17.7 | aagagtggcaggaatgtaatcaac | accttccagctctgtcatagtgc |
| f1020 | 147 | 0.0 | 22.6 | ggtgctcattttccccaata | gctatttaaggagcaggtgagg |
| f424 | 539 | 0.0 | 32.4 | caggcccagatctgtatgaa | tttgaaagaaggtgggagga |
| f303 | 118 | 0.0 | 38.9 | cagtggaggccgttaagtagtgt | tctgtgtttttgatggattgtgag |
| f1131 | 118 | 0.0 | 40.5 | acagacagccaaaacggaac | tgatgcagcagccttatttg |
| f990 | 54 | - | 40.5 | tgaatagcaaatcgcacagg | gtaaggctgcccaaacacat |
| f137 | 54 | 0.0 | 48.6 | acggcatcgacacgcatttta | ctgggttcctctcatctttggttc |
| f1656 | 1067 | 0.0 | 48.6 | ccaccatcagaaggttctcca | accagttccctgttgcagat |
| f976 | 507 | 0.0 | - | gttcactgctcaggcacaaa | gggtgggaatgtgtggatag |
| f587 | 2,319 | - | 48.6 | ccccgtggcgtgcgaacagaaa | cggatcgcgcaaacacaggaacg |
| f71 | 20 | - | 53.5 | cgaggtgaactccaccaagt | tcgtgttagagggggaagtg |
| f122 | 20 | - | 58.4 | ccacaacaatgcaggcaactttca | tctccgggactttttcaa |
| f223 | 20 | 6.5 | 60.0 | acgcatgcccgccacaag | tcccgcattaaaatagaagagaa |
| f195 | 20 | 6.5 | 60.0 | ggccggaggttgataagaa | cacagacagtaaggcggtca |
| f59 | 20 | 6.5 | 69.8 | ggtatgggccgtaagggaatga | aggcaatcgcaccactaaacacc |
| f283 | 20 | - | 69.8 | ggccctgaaaatccaaagcact | tggggaatgtattatatcaaggag |
| f445 | 93 | 6.5 | - | tctgggtctaatcggctctc | cccctcatgaactctgcaat |
| f336 | 93 | 6.5 | 73.0 | actatgcgtccttatttgggtgtg | aattagcctctttagtcttgatgg |
| f119 | 93 | 6.5 | - | cagcccgtagtgtgagtgaa | agcggaatgtaagcatttgg |
| f1737 | 93 | 6.5 | - | acacggctcaacaatccttt | ggaaggagcgtctcaaacag |
| f121 | 75 | 6.5 | 76.2 | ttccccttctccctcttattgttt | aggcctgtgagcacgtggtagaga |
| f1116 | 75 | 8.1 | 79.4 | aggacacagaatgttccaca | gaagctgctgacccagaaac |
| f1361 | 527 | 8.1 | - | cgcaggtgattctcgtagtg | gccattcctgctgtgtgtag |
| f1187 | 180 | 8.1 | 82.6 | acgcccaaatgaaactcatc | tcctcttgcatgttgaacca |
| f1186 | 180 | 11.3 | 87.5 | ccctgacctcacccagttta | gtgctgcacaggaaacactc |
| f1064 | 257 | 17.8 | 87.5 | ggggattggttcctgaagtt | tggccattaagaaggtgaca |
| f1289a | 257 | - | - | caaaccagggacaagtcatagt | ccccacttccactatcaacg |
| f60 | 60 | 27.6 | 87.5 | ggcaatatcctccaaactccttac | accggccttcagatccacacct |
| f151 | 60 | - | 90.7 | tgactttgctctgggtcctt | aagggatcattcaggcacag |
| f1086 | 226 | 37.4 | - | caaggatctcagctggaagg | acacaggaatgggacgatgt |
| f464 | 226 | 50.6 | - | gacgcgtcatggtcagttta | agacacccagagccagtgat |
| f732 | 325 | 52.2 | 93.9 | agtgtgcagcaagcatgttc | ccacatgttcaacaccaagg |
| f1338 | 199 | 53.8 | 93.9 | gccctgatccctttcattct | cacagtcacgttggctcttg |
| f389 | 199 | 53.8 | 95.5 | ttctgagtgaaaggcggaat | cgtttttccgttgatccaga |
| f716 | 304 | 60.3 | 98.7 | gggcgggagagttttctact | tcatcctccctgatgtgtca |
| f1055 | 382 | - | 98.7 | gaagaccatgattgggcagt | acccaggtgctgtaggagtg |
| f1689 | 2100 | 60.3 | - | aaccaaacacaggggttgag | ggtgtttgcctcagatggtt |
| f1585 | 796 | 61.9 | 98.7 | cagtttacgggtccatgagg | cacaagaaccaaaccgtcct |
| f1426 | 601 | 61.9 | 98.7 | tctgcatcaggagtgtttgc | tcctctgtcctgagctggtt |